WebOct 24, 2024 · We're actually currently implementing some potentially interesting stuff. In the next version you'll have a featureSpectra and chromPeakSpectra function that returns MS2 spectra related to a feature or chromatographic peak. stay tuned. WebCobalt-60 is an artificial radioactive isotope of cobalt with a half-life of 5.2747 years. It is synthetically produced by neutron activation of cobalt-59 in nuclear reactors. Cobalt-60 is …
fix: featureSpectra and chromPeakSpectra support mixed …
WebWe can now extract all MS2 spectra for each chromatographic peak with the chromPeakSpectra function. This function identifies all MS2 spectra recorded by the instrument with a retention time within the retention time and with a precursor m/z within the m/z boundaries of the chromatographic peak. chromPeakSpectra: Extract (MS2) spectra associated with chromatographic peaks; collect-methods: Collect MS^n peaks into xcmsFragments; colMax: Find row and column maximum values; correlate-Chromatogram: Correlate chromatograms; c.xcmsSet: Combine xcmsSet objects; descendZero: Find start and end points of a peak population of portknockie
Extract spectra associated with chromatographic peaks — …
WebXCMS for peak detection, retention time alignment, grouping, fill missing peaks, MS2 extraction. Camera for isotope filtration and adduct annotation. MetaboAnalyst for … WebchromPeakSpectra() Extract spectra associated with chromatographic peaks. chromatogram. Extracting chromatograms. chromatographic-peak-detection … WebJan 5, 2024 · Use the R and xcms that you have and use return.type = "MSpectra" as you did. You need then however to follow the examples of the LC-MS/MS vignette of the xcms package that you have installed. You should be able to find/open that vignette by typing browseVignettes (package = "xcms") in your R. sharon alberta